Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015948154.1_cds_XP_016489506.1_80021
CDS Infomation

[gene=LOC107809400] [db_xref=GeneID:107809400] [protein=putative E3 ubiquitin-protein ligase XBAT35 isoform X2] [protein_id=XP_016489506.1] [location=complement(join(59599..60564,61629..61714,62288..62390,63834..63915,64034..64123,64828..64898))] [gbkey=CDS]
Sequence

ATGATGGTTGCCAAACTCCACTCGAAGTTGCTCGGGCAAAGGGTTTTAGCAATGTTGTCC
GTACTATTGAGACAAATCTGCATTTTCTCGGGCTGGATGAGGGAGTTCTATGGTCCAGGG
TTTCTTGAAGCTTTAGCTCCTCAATTGTTATCTAGAAAGATTTGGGTTGTAGTAATACCT
TGCGGTATAGCTGATCCTACGAAGCCTATTAAATTGGAGCTGGCGATTTACTCATCCTTA
GAGGATGCCCAGCCTCGTAATGTTATCGCCTTATGGAAGGCTAACGTTGAAGAGATAAGG
TGGCAACAACCAGATCCTGTGCTGACTATATTTGACAAGTCCAGTAATACTCGATATAAG
TTTACATCAATGAGCGATTCTGAGCAGCAGCAGCTTCAATTGTTACTCAAAGCATGTAAT
GCTGCAACTGAGGTTCTGCCTCCCCGTTTATCACAAAATAGCCAAACTACAGTGCAACAA
TCTGAAAATGCTGCAGAAGCAATGGAATTAGCAATTGGAATCAATGCTTCTATTCATACT
GCTAAAGAAAATAATGTTCTCCCTCATCATGGACAAAGCTCTGGTGTAAAAAATGAAAAT
GATTGGTGTAATACCACAGATGATTCTGCTCACAACGGATGGGGTTCACTTGTTAGAGCC
CAGCCTACATCTGAGATTACTTACCGTGGGTGGACGGATGACCAAATGAAGGTTCAAGAA
AATGGATGGGGAAGTACTGCAGATGTATCCCGTCAAAGACGACAGCACTCGCTTCCTAGA
TCGACCTCTTTTGAACTAAGCTGCAGTGGATGGAACGATAAGCCTGCTGTAGAAGAGTAC
AATGGCTGGGCCGTGCCCCAACCTCGGCCGGGACATAGAGATACCTCCGCCGAAATTCAT
TATCAAGGATGGGGAAAAACTGCAAAGGACAGCGCACTGCCTTCAATAAGCAACACAACA
TCCTCAGGAGTCAGTAGCTGTGAAACGATGGACAAGACAAACAATGCACCTGAATATACG
CCCATTAACAATCTTGTTGAAAATACTGAAACTCAAGAGGGCAATTCTACTTTTGATTTT
GTGGCCCCTTCAGCTCCACCCGTTCCAGAAGAGGTTGTACATGAAGAGGTGGTTCATTAT
CCGGCTATAGATCTTAGCCCGTTGAACTTGTCGATTCCTCCTGGAGAGCAAGCAGCTTCT
GTTACAACTGAAAGGGAAAATAAACATGAGCCTGCATTGTGTATAATATGCTGGGAAGCT
TCTGTTGAAGGAGCTTGTGTACCTTGTGGTCACATGATTGGCTGCATGCAGTGTTTGAAC
CAGATTAATTCCAAGAAAGGCGAGTGCCCTGTTTGTCGAGTAAAGATTGACCAGGTTATA
AAGCTCTACAGTGTTTGA

Peptide Sequence

PEP ID

XP_016489506.1
PEP Infomation

PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X2 [Nicotiana tabacum]
Sequence

MMVAKLHSKLLGQRVLAMLSVLLRQICIFSGWMREFYGPGFLEALAPQLLSRKIWVVVIP
CGIADPTKPIKLELAIYSSLEDAQPRNVIALWKANVEEIRWQQPDPVLTIFDKSSNTRYK
FTSMSDSEQQQLQLLLKACNAATEVLPPRLSQNSQTTVQQSENAAEAMELAIGINASIHT
AKENNVLPHHGQSSGVKNENDWCNTTDDSAHNGWGSLVRAQPTSEITYRGWTDDQMKVQE
NGWGSTADVSRQRRQHSLPRSTSFELSCSGWNDKPAVEEYNGWAVPQPRPGHRDTSAEIH
YQGWGKTAKDSALPSISNTTSSGVSSCETMDKTNNAPEYTPINNLVENTETQEGNSTFDF
VAPSAPPVPEEVVHEEVVHYPAIDLSPLNLSIPPGEQAASVTTERENKHEPALCIICWEA
SVEGACVPCGHMIGCMQCLNQINSKKGECPVCRVKIDQVIKLYSV

Transcript Sequence

Gene sequence data has not been registered.